John the Auto Guy is right, choosing the shipping company is very important. You need to find one that will take proper care of your bike and not be reckless with how it's fastened and handled. One company that I have used successfully in the past was Palmer. They are
Detroit movers that handle motorcycle shipment frequently. They fasten it to a pallet and wrap the body in shrink wrapping. That's how it should be done to prevent accidental scratches and stuff.